JUMP Cell Painting Hub

JUMP (Joint Undertaking for Morphological Profiling) Cell Painting is an effort to produce data and resources to make use of Cell Painting data. It is the result of years of work by the JUMP-CP Consortium.

Getting Started with JUMP

What is the purpose of this website? To provide up-to-date info on everything JUMP-related. We aim to minimize friction for developers, technical writers and biologists to produce and access novel insights and tools. We aim to make this the one-stop shop for the vast majority of JUMP questions, be it computational or biological.

Choose Your Own Path

1. Just exploring the data?

   • Use a web interface; no programming required:
     • JUMPrr tools by Carpenter–Singh Lab (Muñoz et al.)
     • Morpheus by Broad Institute
     • JUMP-CP Data Explorer by Ardigen
     • JUMP-CP Data Portal by Spring Discovery

   You can look up images for a sample, distinguishing features, most-similar genes or compounds, and more! See the Interactive Tools page for instructions for these tools.

2. Want to fetch and analyze data?

   • Follow our how-to guides for common analyses

3. Looking to build tools?

   • Use our Python libraries cp_measure, cpgdata, jump-portrait, jump-babel and other libraries in the monorepo
   • Access the metadata schema

Need help or more information?

• Read the papers creating the datasets for experimental and analysis details:
  • CPJUMP1
  • JUMP data production biorxiv
  • Morphmap
• Raise an issue or ask a question on Github
• Subscribe to updates at jump-cellpainting.broadinstitute.org/more-info

Acknowledgements

This resource was developed by Alan F. Muñoz