gnomad_qc.v4.sample_qc.interval_qc
==================================


Script to define high quality intervals based on per interval aggregate statistics over samples.

Two methods are available for defining high quality intervals:

    - mean fraction of bases over DP 0 to determine high quality intervals.
    - fraction of samples with a mean interval coverage over a specified coverage that
      is different for autosomes and sex chromosomes.

Aggregate statistics over samples can also be stratified by platform to determine
per-platform high quality intervals.





.. argparse::
   :ref: gnomad_qc.v4.sample_qc.interval_qc.get_script_argument_parser
   :prog: gnomad_qc.v4.sample_qc.interval_qc.py



Module Functions
****************

.. gnomad_automodulesummary:: gnomad_qc.v4.sample_qc.interval_qc

.. automodule:: gnomad_qc.v4.sample_qc.interval_qc
    :exclude-members: get_script_argument_parser