gnomad_qc.v4.create_release.create_combined_faf_release_ht ========================================================== Create a joint gnomAD v4 exome and genome frequency and FAF. Generate a Hail Table containing frequencies for exomes and genomes in gnomAD v4, a joint frequency, a joint FAF, and the following tests comparing the two frequencies: - Hail's contingency table test -- chi-squared or Fisher’s exact test of independence depending on min cell count. - Cochran–Mantel–Haenszel test -- stratified test of independence for 2x2xK contingency tables. .. argparse:: :ref: gnomad_qc.v4.create_release.create_combined_faf_release_ht.get_script_argument_parser :prog: gnomad_qc.v4.create_release.create_combined_faf_release_ht.py Module Functions **************** .. gnomad_automodulesummary:: gnomad_qc.v4.create_release.create_combined_faf_release_ht .. automodule:: gnomad_qc.v4.create_release.create_combined_faf_release_ht :exclude-members: get_script_argument_parser