All modules for which code is available
- gnomad_qc.analyses.compute_pext
- gnomad_qc.analyses.resources
- gnomad_qc.v4.annotations.compute_coverage
- gnomad_qc.v4.annotations.fix_freq_an
- gnomad_qc.v4.annotations.generate_freq
- gnomad_qc.v4.annotations.generate_freq_genomes
- gnomad_qc.v4.annotations.generate_variant_qc_annotations
- gnomad_qc.v4.annotations.insilico_predictors
- gnomad_qc.v4.annotations.vep_context_ht
- gnomad_qc.v4.annotations.vrs_annotation_batch
- gnomad_qc.v4.assessment.calculate_per_sample_stats
- gnomad_qc.v4.assessment.summary_stats
- gnomad_qc.v4.create_release.create_combined_faf_release_ht
- gnomad_qc.v4.create_release.create_de_novo_release
- gnomad_qc.v4.create_release.create_false_dup_liftover
- gnomad_qc.v4.create_release.create_release_sites_ht
- gnomad_qc.v4.create_release.create_release_utils
- gnomad_qc.v4.create_release.make_var_annot_hists
- gnomad_qc.v4.create_release.validate_and_export_vcf
- gnomad_qc.v4.resources.annotations
- gnomad_qc.v4.resources.assessment
- gnomad_qc.v4.resources.basics
- gnomad_qc.v4.resources.meta
- gnomad_qc.v4.resources.release
- gnomad_qc.v4.resources.sample_qc
- gnomad_qc.v4.resources.variant_qc
- gnomad_qc.v4.sample_qc.assign_ancestry
- gnomad_qc.v4.sample_qc.create_sample_qc_metadata_ht
- gnomad_qc.v4.sample_qc.create_sample_qc_metadata_ht_genomes
- gnomad_qc.v4.sample_qc.generate_qc_mt
- gnomad_qc.v4.sample_qc.hard_filters
- gnomad_qc.v4.sample_qc.identify_trios
- gnomad_qc.v4.sample_qc.interval_qc
- gnomad_qc.v4.sample_qc.outlier_filtering
- gnomad_qc.v4.sample_qc.platform_inference
- gnomad_qc.v4.sample_qc.relatedness
- gnomad_qc.v4.sample_qc.sex_inference
- gnomad_qc.v4.subset
- gnomad_qc.v4.variant_qc.evaluation
- gnomad_qc.v4.variant_qc.final_filter
- gnomad_qc.v4.variant_qc.final_filter_genomes
- gnomad_qc.v4.variant_qc.import_variant_qc_vcf
- gnomad_qc.v4.variant_qc.random_forest
- gnomad_qc.v4.variant_qc.vqsr
- gnomad_qc.v5.data_ingestion.create_vds
- gnomad_qc.v5.data_ingestion.federated_validity_checks
- gnomad_qc.v5.resources.basics
- gnomad_qc.v5.resources.rwb_utils
- gnomad_qc.v5.resources.sample_qc