Index

C

CLINVAR_FTP_URL (in module gnomad_toolbox.load_reference_data)

copy_directory() (in module gnomad_toolbox.scripts) copy_notebooks() (in module gnomad_toolbox.scripts)

F

filter_by_consequence_category() (in module gnomad_toolbox.filtering.vep) filter_by_gene_symbol() (in module gnomad_toolbox.filtering.variant)

filter_by_intervals() (in module gnomad_toolbox.filtering.variant) filter_to_high_confidence_loftee() (in module gnomad_toolbox.filtering.vep)

G

get_age_distribution() (in module gnomad_toolbox.filtering.variant) get_ancestry_callstats() (in module gnomad_toolbox.filtering.frequency) get_compatible_dataset_versions() (in module gnomad_toolbox.load_data) get_config() (in module gnomad_toolbox.scripts) get_gene_intervals() (in module gnomad_toolbox.filtering.vep) get_gnomad_release() (in module gnomad_toolbox.load_data) get_observed_plofs_for_gene_constraint() (in module gnomad_toolbox.filtering.constraint) get_pext_for_variant() (in module gnomad_toolbox.filtering.pext) get_single_variant() (in module gnomad_toolbox.filtering.variant) get_single_variant_ancestry_callstats() (in module gnomad_toolbox.filtering.frequency) get_variant_count_by_freq_bin() (in module gnomad_toolbox.analysis.general) gnomad_toolbox.analysis.general module gnomad_toolbox.filtering.constraint module gnomad_toolbox.filtering.coverage module

gnomad_toolbox.filtering.frequency module gnomad_toolbox.filtering.pext module gnomad_toolbox.filtering.variant module gnomad_toolbox.filtering.vep module gnomad_toolbox.load_data module gnomad_toolbox.load_reference_data module gnomad_toolbox.scripts module GnomADSession (class in gnomad_toolbox.load_data)

L

load_config() (in module gnomad_toolbox.scripts)

M

module gnomad_toolbox.analysis.general gnomad_toolbox.filtering.constraint gnomad_toolbox.filtering.coverage gnomad_toolbox.filtering.frequency gnomad_toolbox.filtering.pext gnomad_toolbox.filtering.variant gnomad_toolbox.filtering.vep gnomad_toolbox.load_data gnomad_toolbox.load_reference_data gnomad_toolbox.scripts

R

run_jupyter_cli() (in module gnomad_toolbox.scripts)

S

save_config() (in module gnomad_toolbox.scripts)

set_config() (in module gnomad_toolbox.scripts) set_default_data() (gnomad_toolbox.load_data.GnomADSession method)