The Unix Shell (pilot)

Broad Institute

May 9, 2024

11:00 am - 1:00 pm

Instructors: Jean Chang, Amelia Hall, Sophie Webster

Helpers: helper one, helper two

General Information

The Computing Basics series uses content from the Carpentries project to teach basic computing skills to interested members of the Broad community. The Carpentries mission is to teach foundational computational and data science skills to researchers. This is a pilot workshop, testing out a lesson that is still under development. The lesson authors would appreciate any feedback you can give them about the lesson content and suggestions for how it could be further improved.

Who: The course is for Broadies interested in learning computational skills. This pilot session is invitation-only while we refine the course content. A session open to Broadie sign-up is planned for June 21, 2024. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: 105 Broadway #301 (Tahiti), Cambridge MA. Get directions with OpenStreetMap or Google Maps.

When: May 9, 2024. Add to your Google Calendar.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They may need to have a few specific software packages installed (see below).

Accessibility: We are committed to making this workshop accessible to everybody. For workshops at a physical location, the workshop organizers have checked that:

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you please get in touch (using contact details below) and we will attempt to provide them.

Contact: Please email cb-admin@broadinstitute.org for more information.

Roles: To learn more about the roles at the workshop (who will be doing what), refer to the Carpentries Workshop FAQ.

Who can attend?: If you are interested in attending this workshop, contact cb-admin@broadinstitute.org for more information. A larger workshop is planned for Friday June 21, 2024 from 11:30a- 1:30p.


Collaborative Notes

We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.


Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey


Schedule

This workshop is teaching a modified Carpentries lesson. This pilot workshop will cover about half of the [Introduction to the Command Line for Genomics](https://datacarpentry.org/shell-genomics/) lesson content in about an hour. Please check the lesson homepage for a list of lesson sections. The lesson taught in this workshop is being piloted and a precise schedule is yet to be established. Please contact the workshop organisers if you would like more information about the planned schedule.

Setup

To participate in a workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

Please check the "Setup" section of the lesson homepage for instructions to obtain software and test server access that you will need to follow the lesson.