picard.vcf.processor

Class VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>,R>

java.lang.Object

picard.vcf.processor.VariantProcessor.Builder<A,R>

Enclosing class:

VariantProcessor<RESULT,ACCUMULATOR extends VariantProcessor.Accumulator<RESULT>>

public static class VariantProcessor.Builder<A extends VariantProcessor.Accumulator<R>,R>
extends java.lang.Object

Simple builder of VariantProcessors.

Method Summary

Modifier and Type	Method and Description
VariantProcessor<R,A>	build()
VariantProcessor.Builder<A,R>	combiningResultsBy(VariantProcessor.ResultMerger<R> reducer)
static <A extends VariantProcessor.Accumulator<R>,R> VariantProcessor.Builder<A,R>	generatingAccumulatorsBy(VariantProcessor.AccumulatorGenerator<A,R> generator)
VariantProcessor.Builder<A,R>	limitingProcessedRegionsTo(htsjdk.samtools.util.IntervalList intervals)
VariantProcessor.Builder<A,R>	multithreadingBy(int threadCount)
VariantProcessor.Builder<A,R>	withInput(java.io.File... vcfs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

multithreadingBy

public VariantProcessor.Builder<A,R> multithreadingBy(int threadCount)

withInput

public VariantProcessor.Builder<A,R> withInput(java.io.File... vcfs)

limitingProcessedRegionsTo

public VariantProcessor.Builder<A,R> limitingProcessedRegionsTo(htsjdk.samtools.util.IntervalList intervals)

combiningResultsBy

public VariantProcessor.Builder<A,R> combiningResultsBy(VariantProcessor.ResultMerger<R> reducer)

generatingAccumulatorsBy

public static <A extends VariantProcessor.Accumulator<R>,R> VariantProcessor.Builder<A,R> generatingAccumulatorsBy(VariantProcessor.AccumulatorGenerator<A,R> generator)

build

public VariantProcessor<R,A> build()