picard.vcf

Classes

• ByIntervalListVariantContextIterator
• CallingMetricAccumulator
• CallingMetricAccumulator.Result
• CollectVariantCallingMetrics
• CollectVariantCallingMetrics.VariantCallingDetailMetrics
• CollectVariantCallingMetrics.VariantCallingSummaryMetrics
• GA4GHScheme
• GA4GHSchemeWithMissingAsHomRef
• GatherVcfs
• GenotypeConcordance
• GenotypeConcordanceContingencyMetrics
• GenotypeConcordanceCounts
• GenotypeConcordanceDetailMetrics
• GenotypeConcordanceScheme
• GenotypeConcordanceSchemeFactory
• GenotypeConcordanceStates
• GenotypeConcordanceStates.TruthAndCallStates
• GenotypeConcordanceSummaryMetrics
• GvcfMetricAccumulator
• LiftoverVcf
• MakeSitesOnlyVcf
• MergeVcfs
• PairedVariantSubContextIterator
• PairedVariantSubContextIterator.VcfTuple
• RenameSampleInVcf
• SortVcf
• SplitVcfs
• UpdateVcfSequenceDictionary
• VcfFormatConverter
• VcfToIntervalList

Enums

• GenotypeConcordanceStateCodes
• GenotypeConcordanceStates.CallState
• GenotypeConcordanceStates.ContingencyState
• GenotypeConcordanceStates.TruthState