picard.util

Enum VariantType

java.lang.Object

java.lang.Enum<VariantType>

picard.util.VariantType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<VariantType>

public enum VariantType
extends java.lang.Enum<VariantType>

Enum to hold the possible types of dbSnps. Note that these correspsond to the names used in the dbSnp database with the exception of indel (which is in-del in dbSnp).

Enum Constant Summary

Enum Constants

Enum Constant and Description
deletion
insertion
SNP

Method Summary

Modifier and Type	Method and Description
static VariantType	getVariantTypeFromOrdinal(int ordinal) Gets the enum for a given ordinal
static VariantType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static VariantType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

SNP

public static final VariantType SNP

insertion

public static final VariantType insertion

deletion

public static final VariantType deletion

Method Detail

values

public static VariantType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (VariantType c : VariantType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static VariantType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

getVariantTypeFromOrdinal

public static VariantType getVariantTypeFromOrdinal(int ordinal)

Gets the enum for a given ordinal

Parameters:

ordinal -

Returns:

VariantType