picard.sam.markduplicates.util
Interfaces
ReadEndsForMarkDuplicatesMap
Classes
AbstractMarkDuplicatesCommandLineProgram
AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator
AbstractOpticalDuplicateFinderCommandLineProgram
DiskBasedReadEndsForMarkDuplicatesMap
LibraryIdGenerator
MarkQueue
OpticalDuplicateFinder
PhysicalLocationForMateCigar
PhysicalLocationForMateCigarSet
ReadEnds
ReadEndsForMarkDuplicates
ReadEndsForMarkDuplicatesCodec
ReadEndsForMarkDuplicatesWithBarcodes
ReadEndsForMarkDuplicatesWithBarcodesCodec
ReadEndsForMateCigar
SamRecordWithOrdinalAndSetDuplicateReadFlag