picard.sam.markduplicates.util

Class ReadEndsForMarkDuplicatesWithBarcodesCodec

java.lang.Object

picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec

picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesWithBarcodesCodec

All Implemented Interfaces:

htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>, java.lang.Cloneable

public class ReadEndsForMarkDuplicatesWithBarcodesCodec
extends ReadEndsForMarkDuplicatesCodec

Created by nhomer on 9/13/15.

Field Summary

Fields inherited from class picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec

in, out

Constructor Summary

Constructors

Constructor and Description
ReadEndsForMarkDuplicatesWithBarcodesCodec()

Method Summary

Modifier and Type	Method and Description
htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>	clone()
ReadEndsForMarkDuplicates	decode()
void	encode(ReadEndsForMarkDuplicates read)

Methods inherited from class picard.sam.markduplicates.util.ReadEndsForMarkDuplicatesCodec

getInputStream, getOutputStream, setInputStream, setOutputStream

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReadEndsForMarkDuplicatesWithBarcodesCodec

public ReadEndsForMarkDuplicatesWithBarcodesCodec()

Method Detail

clone

public htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> clone()

Specified by:

clone in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>

Overrides:

clone in class ReadEndsForMarkDuplicatesCodec

encode

public void encode(ReadEndsForMarkDuplicates read)

Specified by:

encode in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>

Overrides:

encode in class ReadEndsForMarkDuplicatesCodec

decode

public ReadEndsForMarkDuplicates decode()

Specified by:

decode in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>

Overrides:

decode in class ReadEndsForMarkDuplicatesCodec