picard.sam.markduplicates

Enum MarkDuplicates.DuplicateTaggingPolicy

java.lang.Object

java.lang.Enum<MarkDuplicates.DuplicateTaggingPolicy>

picard.sam.markduplicates.MarkDuplicates.DuplicateTaggingPolicy

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<MarkDuplicates.DuplicateTaggingPolicy>

Enclosing class:

MarkDuplicates

public static enum MarkDuplicates.DuplicateTaggingPolicy
extends java.lang.Enum<MarkDuplicates.DuplicateTaggingPolicy>

Enum used to control how duplicates are flagged in the DT optional tag on each read.

Enum Constant Summary

Enum Constants

Enum Constant and Description
All
DontTag
OpticalOnly

Method Summary

Modifier and Type	Method and Description
static MarkDuplicates.DuplicateTaggingPolicy	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static MarkDuplicates.DuplicateTaggingPolicy[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

DontTag

public static final MarkDuplicates.DuplicateTaggingPolicy DontTag

OpticalOnly

public static final MarkDuplicates.DuplicateTaggingPolicy OpticalOnly

All

public static final MarkDuplicates.DuplicateTaggingPolicy All

Method Detail

values

public static MarkDuplicates.DuplicateTaggingPolicy[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MarkDuplicates.DuplicateTaggingPolicy c : MarkDuplicates.DuplicateTaggingPolicy.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MarkDuplicates.DuplicateTaggingPolicy valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null