picard.sam

Enum RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile

java.lang.Object

java.lang.Enum<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>

picard.sam.RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>

Enclosing class:

RevertOriginalBaseQualitiesAndAddMateCigar

public static enum RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile
extends java.lang.Enum<RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile>

Used as a return for the canSkipSAMFile function.

Enum Constant Summary

Enum Constants

Enum Constant and Description
CAN_SKIP
CANNOT_SKIP_FOUND_NO_MC
CANNOT_SKIP_FOUND_OQ
FOUND_NO_EVIDENCE

Method Summary

Modifier and Type	Method and Description
boolean	canSkip()
java.lang.String	getMessage(int maxRecordsToExamine)
static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

CAN_SKIP

public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CAN_SKIP

CANNOT_SKIP_FOUND_OQ

public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CANNOT_SKIP_FOUND_OQ

CANNOT_SKIP_FOUND_NO_MC

public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile CANNOT_SKIP_FOUND_NO_MC

FOUND_NO_EVIDENCE

public static final RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile FOUND_NO_EVIDENCE

Method Detail

values

public static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile c : RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static RevertOriginalBaseQualitiesAndAddMateCigar.CanSkipSamFile valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

getMessage

public java.lang.String getMessage(int maxRecordsToExamine)

canSkip

public boolean canSkip()