picard.illumina.parser.readers

Class BclIndexReader

java.lang.Object

picard.illumina.parser.readers.BclIndexReader

public class BclIndexReader
extends java.lang.Object

Annoyingly, there are two different files with extension .bci in NextSeq output. This reader handles the file that contains virtual file pointers into a .bcl.bgzf file. After the header, there is a 64-bit record per tile.

Constructor Summary

Constructors

Constructor and Description
BclIndexReader(java.io.File bclFile)

Method Summary

Modifier and Type	Method and Description
long	get(int recordNumber)
java.io.File	getBciFile()
int	getNumTiles()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BclIndexReader

public BclIndexReader(java.io.File bclFile)

Method Detail

getNumTiles

public int getNumTiles()

get

public long get(int recordNumber)

getBciFile

public java.io.File getBciFile()