picard.illumina.parser

Class MultiTileLocsParser

java.lang.Object

picard.illumina.parser.MultiTileParser<picard.illumina.parser.PositionalData>

picard.illumina.parser.MultiTileLocsParser

public class MultiTileLocsParser
extends MultiTileParser<picard.illumina.parser.PositionalData>

Read locs file that contains multiple tiles in a single file. A tile index is needed to parse this file so that {tile number, cluster number} can be converted into absolute record number in file.

Constructor Summary

Constructors

Constructor and Description
MultiTileLocsParser(TileIndex tileIndex, java.util.List<java.lang.Integer> requestedTiles, java.io.File locsFile, int lane)

Method Summary

Modifier and Type	Method and Description
void	close()

Methods inherited from class picard.illumina.parser.MultiTileParser

getTileOfNextCluster, hasNext, next, remove, seekToTile, supportedTypes, verifyData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Detail

MultiTileLocsParser

public MultiTileLocsParser(TileIndex tileIndex,
                           java.util.List<java.lang.Integer> requestedTiles,
                           java.io.File locsFile,
                           int lane)

Method Detail

close

public void close()