picard.illumina.parser

Class FourChannelIntensityData

java.lang.Object

picard.illumina.parser.FourChannelIntensityData

public class FourChannelIntensityData
extends java.lang.Object

Holds a 4 short values for each cycle of a read. This is used, to store raw intensities, processed intensities, or noise. Note that for Illumina 1.1 and 1.3, these are floating point values, but are truncated to shorts to store here. Indices into the channel arrays are zero-based, i.e. the first cycle is 0.

Author:

jburke@broadinstitute.org

Constructor Summary

Constructors

Constructor and Description
FourChannelIntensityData(int numberOfCycles)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
short[]	getA()
short[]	getC()
short[]	getChannel(IntensityChannel channel)
short[]	getG()
short[]	getT()
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FourChannelIntensityData

public FourChannelIntensityData(int numberOfCycles)

Method Detail

getChannel

public short[] getChannel(IntensityChannel channel)

getA

public short[] getA()

getC

public short[] getC()

getG

public short[] getG()

getT

public short[] getT()

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object