picard.illumina

Class LanePhasingMetricsCollector

java.lang.Object

picard.illumina.LanePhasingMetricsCollector

public class LanePhasingMetricsCollector
extends java.lang.Object

Helper class used to transform tile data for a lane into a collection of IlluminaPhasingMetrics

Constructor Summary

Constructors

Constructor and Description
LanePhasingMetricsCollector(java.util.Collection<Tile> laneTiles) Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads

Method Summary

Modifier and Type	Method and Description
java.util.Map<TileTemplateRead,java.lang.Float>	getMedianPhasingMap()
java.util.Map<TileTemplateRead,java.lang.Float>	getMedianPrePhasingMap()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LanePhasingMetricsCollector

public LanePhasingMetricsCollector(java.util.Collection<Tile> laneTiles)

Constructor takes a lane's collection of Tiles and calculates the median phasing/prephasing for the first and second (if available) reads

Method Detail

getMedianPhasingMap

public java.util.Map<TileTemplateRead,java.lang.Float> getMedianPhasingMap()

getMedianPrePhasingMap

public java.util.Map<TileTemplateRead,java.lang.Float> getMedianPrePhasingMap()