picard.fingerprint

Class GenotypeReader.VariantIterator

java.lang.Object

picard.fingerprint.GenotypeReader.VariantIterator

All Implemented Interfaces:

htsjdk.samtools.util.CloseableIterator<htsjdk.variant.variantcontext.VariantContext>, java.io.Closeable, java.lang.AutoCloseable, java.util.Iterator<htsjdk.variant.variantcontext.VariantContext>

Enclosing class:

GenotypeReader

public abstract static class GenotypeReader.VariantIterator
extends java.lang.Object
implements htsjdk.samtools.util.CloseableIterator<htsjdk.variant.variantcontext.VariantContext>

Small class to encapsulate an iterator over variants, optionally with a sequence dictionary.

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	VariantIterator(htsjdk.samtools.SAMSequenceDictionary dictionary, java.lang.Object header)

Method Summary

Modifier and Type	Method and Description
java.lang.Object	getHeader()
htsjdk.samtools.SAMSequenceDictionary	getSequenceDictionary()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

close, stream, toList

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Constructor Detail

VariantIterator

protected VariantIterator(htsjdk.samtools.SAMSequenceDictionary dictionary,
                          java.lang.Object header)

Method Detail

getSequenceDictionary

public htsjdk.samtools.SAMSequenceDictionary getSequenceDictionary()

getHeader

public java.lang.Object getHeader()