picard.annotation

Class RefFlatReader

java.lang.Object

picard.annotation.RefFlatReader

public class RefFlatReader
extends java.lang.Object

Loads gene annotations from a refFlat file into an OverlapDetector. Discards annotations that are not internally consistent, e.g. transcripts on different chromosomes or different strands.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	RefFlatReader.RefFlatColumns

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait