public class FingerprintingDetailMetrics
extends htsjdk.samtools.metrics.MetricBase
Modifier and Type | Field and Description |
---|---|
java.lang.String |
CHROM
The chromosome on which the SNP resides.
|
java.lang.String |
EXPECTED_GENOTYPE
The expected genotype of the sample at the SNP locus.
|
double |
LOD
The LOD score for OBSERVED_GENOTYPE vs.
|
int |
OBS_A
The number of observations of the first, or A, allele of the SNP in the sequencing data.
|
int |
OBS_B
The number of observations of the second, or B, allele of the SNP in the sequencing data.
|
java.lang.String |
OBSERVED_GENOTYPE
The most likely genotype given the observed evidence at the SNP locus in the sequencing data.
|
int |
POSITION
The position of the SNP on the chromosome.
|
java.lang.String |
READ_GROUP
The sequencing read group from which sequence data was fingerprinted.
|
java.lang.String |
SAMPLE
The name of the sample who's genotypes the sequence data was compared to.
|
java.lang.String |
SNP
The name of a representative SNP within the haplotype that was compared.
|
java.lang.String |
SNP_ALLELES
The possible alleles for the SNP.
|
Constructor and Description |
---|
FingerprintingDetailMetrics() |
public java.lang.String READ_GROUP
public java.lang.String SAMPLE
public java.lang.String SNP
public java.lang.String SNP_ALLELES
public java.lang.String CHROM
public int POSITION
public java.lang.String EXPECTED_GENOTYPE
public java.lang.String OBSERVED_GENOTYPE
public double LOD
public int OBS_A
public int OBS_B