picard.analysis

Class CollectWgsMetricsFromSampledSites.SampledWgsMetrics

java.lang.Object

htsjdk.samtools.metrics.MetricBase

picard.analysis.CollectWgsMetrics.WgsMetrics

picard.analysis.CollectWgsMetricsFromSampledSites.SampledWgsMetrics

Enclosing class:

CollectWgsMetricsFromSampledSites

public static class CollectWgsMetricsFromSampledSites.SampledWgsMetrics
extends CollectWgsMetrics.WgsMetrics

Field Summary

Fields inherited from class picard.analysis.CollectWgsMetrics.WgsMetrics

GENOME_TERRITORY, HET_SNP_Q, HET_SNP_SENSITIVITY, MAD_COVERAGE, MEAN_COVERAGE, MEDIAN_COVERAGE, PCT_100X, PCT_10X, PCT_15X, PCT_1X, PCT_20X, PCT_25X, PCT_30X, PCT_40X, PCT_50X, PCT_5X, PCT_60X, PCT_70X, PCT_80X, PCT_90X, PCT_EXC_BASEQ, PCT_EXC_CAPPED, PCT_EXC_DUPE, PCT_EXC_MAPQ, PCT_EXC_OVERLAP, PCT_EXC_TOTAL, PCT_EXC_UNPAIRED, SD_COVERAGE

Constructor Summary

Constructors

Constructor and Description
SampledWgsMetrics()

Method Summary

Methods inherited from class htsjdk.samtools.metrics.MetricBase

equals, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SampledWgsMetrics

public SampledWgsMetrics()