picard.analysis

Interface CollectMultipleMetrics.ProgramInterface

All Known Implementing Classes:

CollectMultipleMetrics.Program

Enclosing class:

CollectMultipleMetrics

public static interface CollectMultipleMetrics.ProgramInterface

Method Summary

Modifier and Type	Method and Description
SinglePassSamProgram	makeInstance(java.lang.String outbase, java.lang.String outext, java.io.File input, java.io.File reference, java.util.Set<MetricAccumulationLevel> metricAccumulationLevel, java.io.File dbSnp, java.io.File intervals)
boolean	needsReferenceSequence()
boolean	supportsMetricAccumulationLevel()

Method Detail

makeInstance

SinglePassSamProgram makeInstance(java.lang.String outbase,
                                  java.lang.String outext,
                                  java.io.File input,
                                  java.io.File reference,
                                  java.util.Set<MetricAccumulationLevel> metricAccumulationLevel,
                                  java.io.File dbSnp,
                                  java.io.File intervals)

needsReferenceSequence

boolean needsReferenceSequence()

supportsMetricAccumulationLevel

boolean supportsMetricAccumulationLevel()