variant_reader.h File Reference

#include "variant_header.h"
#include "variant_iterator.h"
#include "../exceptions.h"
#include "../utils/hts_memory.h"
#include "../utils/variant_utils.h"
#include "htslib/vcf.h"
#include <string>
#include <fstream>
#include <algorithm>
#include <memory>

Go to the source code of this file.

Classes
class	gamgee::VariantReader< ITERATOR >
	Utility class to read a VCF/BCF file with an appropriate Variant iterator from a stream (e.g. file, stdin, ...) in a for-each loop. More...

Namespaces
	gamgee

Typedefs
using	gamgee::SingleVariantReader = VariantReader< VariantIterator >