variant_field_type.h File Reference

#include "htslib/vcf.h"
#include <string>
#include <iostream>

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Namespaces
	gamgee
	gamgee::utils
	utility functions for the gamgee library

Enumerations
enum	gamgee::utils::VariantFieldType {   gamgee::utils::VariantFieldType::NIL = 0, gamgee::utils::VariantFieldType::INT8 = 1, gamgee::utils::VariantFieldType::INT16 = 2, gamgee::utils::VariantFieldType::INT32 = 3,   gamgee::utils::VariantFieldType::FLOAT = 5, gamgee::utils::VariantFieldType::STRING = 7 }
	an enumeration of the types in htslib for the format field values More...

Functions
int32_t	gamgee::utils::convert_data_to_integer (const uint8_t *data_ptr, const int index, const uint8_t num_bytes_per_value, const VariantFieldType &type)
	converts the value in an index from the byte array into int32_t More...
float	gamgee::utils::convert_data_to_float (const uint8_t *data_ptr, const int index, const uint8_t num_bytes_per_value, const VariantFieldType &type)
	converts the value in an index from the byte array into float More...
std::string	gamgee::utils::convert_data_to_string (const uint8_t *data_ptr, const int index, const uint8_t num_bytes_per_value, const VariantFieldType &type)
	converts the value in an index from the byte array into string More...
uint8_t	gamgee::utils::size_for_type (const VariantFieldType &type, const bcf_fmt_t *const format_ptr)
	returns the number of bytes for a given VariantFieldType More...
uint8_t	gamgee::utils::size_for_type (const VariantFieldType &type, const bcf_info_t *const info_ptr)
	returns the number of bytes for a given VariantFieldType More...
bool	gamgee::utils::is_string_type (const int32_t &type)
	check if type is of type string More...