variant.h File Reference

#include "variant_header.h"
#include "individual_field.h"
#include "individual_field_value.h"
#include "shared_field.h"
#include "variant_filters.h"
#include "genotype.h"
#include "../utils/variant_utils.h"
#include "htslib/sam.h"
#include "boost/dynamic_bitset.hpp"
#include <string>
#include <memory>
#include <vector>

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Classes
class	gamgee::Variant
	Utility class to manipulate a Variant record. More...

Namespaces
	gamgee

Enumerations
enum	gamgee::DiploidPLGenotype { gamgee::DiploidPLGenotype::HOM_REF = 0, gamgee::DiploidPLGenotype::HET = 1, gamgee::DiploidPLGenotype::HOM_VAR = 2 }
	simple enum to keep the indices of the genotypes in the PL field of diploid individuals More...