sam_reader.h File Reference

#include "sam_iterator.h"
#include "sam_pair_iterator.h"
#include "../exceptions.h"
#include "../utils/hts_memory.h"
#include "htslib/sam.h"
#include <string>
#include <iostream>
#include <fstream>
#include <memory>
#include <vector>

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Classes
class	gamgee::SamReader< ITERATOR >
	Utility class to read a SAM/BAM/CRAM file with an appropriate Sam iterator from a stream (e.g. file, stdin, ...) in a for-each loop. More...

Namespaces
	gamgee

Typedefs
using	gamgee::SingleSamReader = SamReader< SamIterator >
using	gamgee::PairSamReader = SamReader< SamPairIterator >