read_group.h

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#ifndef gamgee__read_group__guard
#define gamgee__read_group__guard

#include<string>

namespace gamgee {


  class ReadGroup {

  public:
    std::string id;
    std::string center;
    std::string description;
    std::string date_time;
    std::string flow_order;
    std::string key_sequence;
    std::string library;
    std::string programs;
    std::string median_insert_size;
    std::string platform;
    std::string platform_unit;
    std::string sample;

    ReadGroup() = default;
    ReadGroup(const std::string& header_line);

  private:
    static const char ID_TAG [];
    static const char CENTER_TAG [];
    static const char DESCRIPTION_TAG [];
    static const char DATE_TIME_TAG [];
    static const char FLOW_ORDER_TAG [];
    static const char KEY_SEQUENCE_TAG [];
    static const char LIBRARY_TAG [];
    static const char PROGRAMS_TAG [];
    static const char MEDIAN_INSERT_SIZE_TAG [];
    static const char PLATFORM_TAG [];
    static const char PLATFORM_UNIT_TAG [];
    static const char SAMPLE_TAG [];

    static bool starts_with(const std::string& token, const char tag[2]) {
        return token[0] == tag[0] && token[1] == tag[1];
    }
  };


}



#endif //gamgee__read_group__guard