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khash.h
Go to the documentation of this file.
1
/* The MIT License
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Copyright (c) 2008, 2009, 2011 by Attractive Chaos <attractor@live.co.uk>
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Permission is hereby granted, free of charge, to any person obtaining
6
a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
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BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
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ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
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CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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*/
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/*
27
An example:
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#include "khash.h"
30
KHASH_MAP_INIT_INT(32, char)
31
int main() {
32
int ret, is_missing;
33
khiter_t k;
34
khash_t(32) *h = kh_init(32);
35
k = kh_put(32, h, 5, &ret);
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kh_value(h, k) = 10;
37
k = kh_get(32, h, 10);
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is_missing = (k == kh_end(h));
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k = kh_get(32, h, 5);
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kh_del(32, h, k);
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for (k = kh_begin(h); k != kh_end(h); ++k)
42
if (kh_exist(h, k)) kh_value(h, k) = 1;
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kh_destroy(32, h);
44
return 0;
45
}
46
*/
47
48
/*
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2013-05-02 (0.2.8):
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* Use quadratic probing. When the capacity is power of 2, stepping function
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i*(i+1)/2 guarantees to traverse each bucket. It is better than double
53
hashing on cache performance and is more robust than linear probing.
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In theory, double hashing should be more robust than quadratic probing.
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However, my implementation is probably not for large hash tables, because
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the second hash function is closely tied to the first hash function,
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which reduce the effectiveness of double hashing.
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Reference: http://research.cs.vt.edu/AVresearch/hashing/quadratic.php
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2011-12-29 (0.2.7):
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* Minor code clean up; no actual effect.
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2011-09-16 (0.2.6):
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* The capacity is a power of 2. This seems to dramatically improve the
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speed for simple keys. Thank Zilong Tan for the suggestion. Reference:
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- http://code.google.com/p/ulib/
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- http://nothings.org/computer/judy/
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* Allow to optionally use linear probing which usually has better
75
performance for random input. Double hashing is still the default as it
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is more robust to certain non-random input.
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* Added Wang's integer hash function (not used by default). This hash
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function is more robust to certain non-random input.
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2011-02-14 (0.2.5):
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* Allow to declare global functions.
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2009-09-26 (0.2.4):
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* Improve portability
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2008-09-19 (0.2.3):
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* Corrected the example
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* Improved interfaces
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2008-09-11 (0.2.2):
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* Improved speed a little in kh_put()
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2008-09-10 (0.2.1):
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* Added kh_clear()
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* Fixed a compiling error
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2008-09-02 (0.2.0):
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* Changed to token concatenation which increases flexibility.
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2008-08-31 (0.1.2):
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* Fixed a bug in kh_get(), which has not been tested previously.
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2008-08-31 (0.1.1):
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* Added destructor
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*/
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#ifndef __AC_KHASH_H
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#define __AC_KHASH_H
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#define AC_VERSION_KHASH_H "0.2.8"
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#include <stdlib.h>
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#include <string.h>
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#include <limits.h>
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/* compiler specific configuration */
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#if UINT_MAX == 0xffffffffu
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typedef
unsigned
int
khint32_t;
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#elif ULONG_MAX == 0xffffffffu
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typedef
unsigned
long
khint32_t;
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#endif
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#if ULONG_MAX == ULLONG_MAX
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typedef
unsigned
long
khint64_t
;
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#else
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typedef
unsigned
long
long
khint64_t
;
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#endif
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#ifdef _MSC_VER
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#define kh_inline __inline
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#else
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#define kh_inline inline
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#endif
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typedef
khint32_t
khint_t
;
153
typedef
khint_t
khiter_t
;
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#define __ac_isempty(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&2)
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#define __ac_isdel(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&1)
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#define __ac_iseither(flag, i) ((flag[i>>4]>>((i&0xfU)<<1))&3)
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#define __ac_set_isdel_false(flag, i) (flag[i>>4]&=~(1ul<<((i&0xfU)<<1)))
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#define __ac_set_isempty_false(flag, i) (flag[i>>4]&=~(2ul<<((i&0xfU)<<1)))
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#define __ac_set_isboth_false(flag, i) (flag[i>>4]&=~(3ul<<((i&0xfU)<<1)))
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#define __ac_set_isdel_true(flag, i) (flag[i>>4]|=1ul<<((i&0xfU)<<1))
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#define __ac_fsize(m) ((m) < 16? 1 : (m)>>4)
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#ifndef kroundup32
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#define kroundup32(x) (--(x), (x)|=(x)>>1, (x)|=(x)>>2, (x)|=(x)>>4, (x)|=(x)>>8, (x)|=(x)>>16, ++(x))
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#endif
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#ifndef kcalloc
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#define kcalloc(N,Z) calloc(N,Z)
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#endif
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#ifndef kmalloc
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#define kmalloc(Z) malloc(Z)
174
#endif
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#ifndef krealloc
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#define krealloc(P,Z) realloc(P,Z)
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#endif
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#ifndef kfree
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#define kfree(P) free(P)
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#endif
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static
const
double
__ac_HASH_UPPER = 0.77;
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#define __KHASH_TYPE(name, khkey_t, khval_t) \
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typedef struct { \
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khint_t n_buckets, size, n_occupied, upper_bound; \
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khint32_t *flags; \
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khkey_t *keys; \
189
khval_t *vals; \
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} kh_##name##_t;
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#define __KHASH_PROTOTYPES(name, khkey_t, khval_t) \
193
extern kh_##name##_t *kh_init_##name(void); \
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extern void kh_destroy_##name(kh_##name##_t *h); \
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extern void kh_clear_##name(kh_##name##_t *h); \
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extern khint_t kh_get_##name(const kh_##name##_t *h, khkey_t key); \
197
extern int kh_resize_##name(kh_##name##_t *h, khint_t new_n_buckets); \
198
extern khint_t kh_put_##name(kh_##name##_t *h, khkey_t key, int *ret); \
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extern void kh_del_##name(kh_##name##_t *h, khint_t x);
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#define __KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) \
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SCOPE kh_##name##_t *kh_init_##name(void) { \
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return (kh_##name##_t*)kcalloc(1, sizeof(kh_##name##_t)); \
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} \
205
SCOPE void kh_destroy_##name(kh_##name##_t *h) \
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{ \
207
if (h) { \
208
kfree((void *)h->keys); kfree(h->flags); \
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kfree((void *)h->vals); \
210
kfree(h); \
211
} \
212
} \
213
SCOPE void kh_clear_##name(kh_##name##_t *h) \
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{ \
215
if (h && h->flags) { \
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memset(h->flags, 0xaa, __ac_fsize(h->n_buckets) * sizeof(khint32_t)); \
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h->size = h->n_occupied = 0; \
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} \
219
} \
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SCOPE khint_t kh_get_##name(const kh_##name##_t *h, khkey_t key) \
221
{ \
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if (h->n_buckets) { \
223
khint_t k, i, last, mask, step = 0; \
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mask = h->n_buckets - 1; \
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k = __hash_func(key); i = k & mask; \
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last = i; \
227
while (!__ac_isempty(h->flags, i) && (__ac_isdel(h->flags, i) || !__hash_equal(h->keys[i], key))) { \
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i = (i + (++step)) & mask; \
229
if (i == last) return h->n_buckets; \
230
} \
231
return __ac_iseither(h->flags, i)? h->n_buckets : i; \
232
} else return 0; \
233
} \
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SCOPE int kh_resize_##name(kh_##name##_t *h, khint_t new_n_buckets) \
235
{
/* This function uses 0.25*n_buckets bytes of working space instead of [sizeof(key_t+val_t)+.25]*n_buckets. */
\
236
khint32_t *new_flags = 0; \
237
khint_t j = 1; \
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{ \
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kroundup32(new_n_buckets); \
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if (new_n_buckets < 4) new_n_buckets = 4; \
241
if (h->size >= (khint_t)(new_n_buckets * __ac_HASH_UPPER + 0.5)) j = 0;
/* requested size is too small */
\
242
else {
/* hash table size to be changed (shrink or expand); rehash */
\
243
new_flags = (khint32_t*)kmalloc(__ac_fsize(new_n_buckets) * sizeof(khint32_t)); \
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if (!new_flags) return -1; \
245
memset(new_flags, 0xaa, __ac_fsize(new_n_buckets) * sizeof(khint32_t)); \
246
if (h->n_buckets < new_n_buckets) {
/* expand */
\
247
khkey_t *new_keys = (khkey_t*)krealloc((void *)h->keys, new_n_buckets * sizeof(khkey_t)); \
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if (!new_keys) return -1; \
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h->keys = new_keys; \
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if (kh_is_map) { \
251
khval_t *new_vals = (khval_t*)krealloc((void *)h->vals, new_n_buckets * sizeof(khval_t)); \
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if (!new_vals) return -1; \
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h->vals = new_vals; \
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} \
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}
/* otherwise shrink */
\
256
} \
257
} \
258
if (j) {
/* rehashing is needed */
\
259
for (j = 0; j != h->n_buckets; ++j) { \
260
if (__ac_iseither(h->flags, j) == 0) { \
261
khkey_t key = h->keys[j]; \
262
khval_t val; \
263
khint_t new_mask; \
264
new_mask = new_n_buckets - 1; \
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if (kh_is_map) val = h->vals[j]; \
266
__ac_set_isdel_true(h->flags, j); \
267
while (1) {
/* kick-out process; sort of like in Cuckoo hashing */
\
268
khint_t k, i, step = 0; \
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k = __hash_func(key); \
270
i = k & new_mask; \
271
while (!__ac_isempty(new_flags, i)) i = (i + (++step)) & new_mask; \
272
__ac_set_isempty_false(new_flags, i); \
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if (i < h->n_buckets && __ac_iseither(h->flags, i) == 0) {
/* kick out the existing element */
\
274
{ khkey_t tmp = h->keys[i]; h->keys[i] = key; key = tmp; } \
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if (kh_is_map) { khval_t tmp = h->vals[i]; h->vals[i] = val; val = tmp; } \
276
__ac_set_isdel_true(h->flags, i);
/* mark it as deleted in the old hash table */
\
277
} else {
/* write the element and jump out of the loop */
\
278
h->keys[i] = key; \
279
if (kh_is_map) h->vals[i] = val; \
280
break; \
281
} \
282
} \
283
} \
284
} \
285
if (h->n_buckets > new_n_buckets) {
/* shrink the hash table */
\
286
h->keys = (khkey_t*)krealloc((void *)h->keys, new_n_buckets * sizeof(khkey_t)); \
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if (kh_is_map) h->vals = (khval_t*)krealloc((void *)h->vals, new_n_buckets * sizeof(khval_t)); \
288
} \
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kfree(h->flags);
/* free the working space */
\
290
h->flags = new_flags; \
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h->n_buckets = new_n_buckets; \
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h->n_occupied = h->size; \
293
h->upper_bound = (khint_t)(h->n_buckets * __ac_HASH_UPPER + 0.5); \
294
} \
295
return 0; \
296
} \
297
SCOPE khint_t kh_put_##name(kh_##name##_t *h, khkey_t key, int *ret) \
298
{ \
299
khint_t x; \
300
if (h->n_occupied >= h->upper_bound) {
/* update the hash table */
\
301
if (h->n_buckets > (h->size<<1)) { \
302
if (kh_resize_##name(h, h->n_buckets - 1) < 0) {
/* clear "deleted" elements */
\
303
*ret = -1; return h->n_buckets; \
304
} \
305
} else if (kh_resize_##name(h, h->n_buckets + 1) < 0) {
/* expand the hash table */
\
306
*ret = -1; return h->n_buckets; \
307
} \
308
}
/* TODO: to implement automatically shrinking; resize() already support shrinking */
\
309
{ \
310
khint_t k, i, site, last, mask = h->n_buckets - 1, step = 0; \
311
x = site = h->n_buckets; k = __hash_func(key); i = k & mask; \
312
if (__ac_isempty(h->flags, i)) x = i;
/* for speed up */
\
313
else { \
314
last = i; \
315
while (!__ac_isempty(h->flags, i) && (__ac_isdel(h->flags, i) || !__hash_equal(h->keys[i], key))) { \
316
if (__ac_isdel(h->flags, i)) site = i; \
317
i = (i + (++step)) & mask; \
318
if (i == last) { x = site; break; } \
319
} \
320
if (x == h->n_buckets) { \
321
if (__ac_isempty(h->flags, i) && site != h->n_buckets) x = site; \
322
else x = i; \
323
} \
324
} \
325
} \
326
if (__ac_isempty(h->flags, x)) {
/* not present at all */
\
327
h->keys[x] = key; \
328
__ac_set_isboth_false(h->flags, x); \
329
++h->size; ++h->n_occupied; \
330
*ret = 1; \
331
} else if (__ac_isdel(h->flags, x)) {
/* deleted */
\
332
h->keys[x] = key; \
333
__ac_set_isboth_false(h->flags, x); \
334
++h->size; \
335
*ret = 2; \
336
} else *ret = 0;
/* Don't touch h->keys[x] if present and not deleted */
\
337
return x; \
338
} \
339
SCOPE void kh_del_##name(kh_##name##_t *h, khint_t x) \
340
{ \
341
if (x != h->n_buckets && !__ac_iseither(h->flags, x)) { \
342
__ac_set_isdel_true(h->flags, x); \
343
--h->size; \
344
} \
345
}
346
347
#define KHASH_DECLARE(name, khkey_t, khval_t) \
348
__KHASH_TYPE(name, khkey_t, khval_t) \
349
__KHASH_PROTOTYPES(name, khkey_t, khval_t)
350
351
#define KHASH_INIT2(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) \
352
__KHASH_TYPE(name, khkey_t, khval_t) \
353
__KHASH_IMPL(name, SCOPE, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal)
354
355
#define KHASH_INIT(name, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal) \
356
KHASH_INIT2(name, static kh_inline, khkey_t, khval_t, kh_is_map, __hash_func, __hash_equal)
357
358
/* --- BEGIN OF HASH FUNCTIONS --- */
359
365
#define kh_int_hash_func(key) (khint32_t)(key)
366
369
#define kh_int_hash_equal(a, b) ((a) == (b))
370
375
#define kh_int64_hash_func(key) (khint32_t)((key)>>33^(key)^(key)<<11)
376
379
#define kh_int64_hash_equal(a, b) ((a) == (b))
380
385
static
kh_inline
khint_t
__ac_X31_hash_string(
const
char
*s)
386
{
387
khint_t
h = (
khint_t
)*s;
388
if
(h)
for
(++s ; *s; ++s) h = (h << 5) - h + (
khint_t
)*s;
389
return
h;
390
}
396
#define kh_str_hash_func(key) __ac_X31_hash_string(key)
397
400
#define kh_str_hash_equal(a, b) (strcmp(a, b) == 0)
401
402
static
kh_inline
khint_t
__ac_Wang_hash(
khint_t
key)
403
{
404
key += ~(key << 15);
405
key ^= (key >> 10);
406
key += (key << 3);
407
key ^= (key >> 6);
408
key += ~(key << 11);
409
key ^= (key >> 16);
410
return
key;
411
}
412
#define kh_int_hash_func2(k) __ac_Wang_hash((khint_t)key)
413
414
/* --- END OF HASH FUNCTIONS --- */
415
416
/* Other convenient macros... */
417
422
#define khash_t(name) kh_##name##_t
423
429
#define kh_init(name) kh_init_##name()
430
436
#define kh_destroy(name, h) kh_destroy_##name(h)
437
443
#define kh_clear(name, h) kh_clear_##name(h)
444
451
#define kh_resize(name, h, s) kh_resize_##name(h, s)
452
464
#define kh_put(name, h, k, r) kh_put_##name(h, k, r)
465
473
#define kh_get(name, h, k) kh_get_##name(h, k)
474
481
#define kh_del(name, h, k) kh_del_##name(h, k)
482
489
#define kh_exist(h, x) (!__ac_iseither((h)->flags, (x)))
490
497
#define kh_key(h, x) ((h)->keys[x])
498
506
#define kh_val(h, x) ((h)->vals[x])
507
511
#define kh_value(h, x) ((h)->vals[x])
512
518
#define kh_begin(h) (khint_t)(0)
519
525
#define kh_end(h) ((h)->n_buckets)
526
532
#define kh_size(h) ((h)->size)
533
539
#define kh_n_buckets(h) ((h)->n_buckets)
540
548
#define kh_foreach(h, kvar, vvar, code) { khint_t __i; \
549
for (__i = kh_begin(h); __i != kh_end(h); ++__i) { \
550
if (!kh_exist(h,__i)) continue; \
551
(kvar) = kh_key(h,__i); \
552
(vvar) = kh_val(h,__i); \
553
code; \
554
} }
555
562
#define kh_foreach_value(h, vvar, code) { khint_t __i; \
563
for (__i = kh_begin(h); __i != kh_end(h); ++__i) { \
564
if (!kh_exist(h,__i)) continue; \
565
(vvar) = kh_val(h,__i); \
566
code; \
567
} }
568
569
/* More conenient interfaces */
570
575
#define KHASH_SET_INIT_INT(name) \
576
KHASH_INIT(name, khint32_t, char, 0, kh_int_hash_func, kh_int_hash_equal)
577
583
#define KHASH_MAP_INIT_INT(name, khval_t) \
584
KHASH_INIT(name, khint32_t, khval_t, 1, kh_int_hash_func, kh_int_hash_equal)
585
590
#define KHASH_SET_INIT_INT64(name) \
591
KHASH_INIT(name, khint64_t, char, 0, kh_int64_hash_func, kh_int64_hash_equal)
592
598
#define KHASH_MAP_INIT_INT64(name, khval_t) \
599
KHASH_INIT(name, khint64_t, khval_t, 1, kh_int64_hash_func, kh_int64_hash_equal)
600
601
typedef
const
char
*
kh_cstr_t
;
606
#define KHASH_SET_INIT_STR(name) \
607
KHASH_INIT(name, kh_cstr_t, char, 0, kh_str_hash_func, kh_str_hash_equal)
608
614
#define KHASH_MAP_INIT_STR(name, khval_t) \
615
KHASH_INIT(name, kh_cstr_t, khval_t, 1, kh_str_hash_func, kh_str_hash_equal)
616
617
#endif
/* __AC_KHASH_H */
kh_cstr_t
const char * kh_cstr_t
Definition:
khash.h:601
khint_t
khint32_t khint_t
Definition:
khash.h:152
khiter_t
khint_t khiter_t
Definition:
khash.h:153
kh_inline
#define kh_inline
Definition:
khash.h:149
khint64_t
unsigned long khint64_t
Definition:
khash.h:141
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