fastq_reader.h

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#ifndef gamgee__fastq_reader__guard
#define gamgee__fastq_reader__guard

#include "fastq_iterator.h"

#include <string>
#include <iostream>
#include <fstream>
#include <vector>
#include <memory>

namespace gamgee {

class FastqReader {
 public:

  explicit FastqReader(const std::string& filename);

  explicit FastqReader(const std::vector<std::string>& filenames);

  explicit FastqReader(std::istream* const input);

  FastqReader(FastqReader&&) = default;
  FastqReader& operator=(FastqReader&&) = default;

  FastqReader(const FastqReader&) = delete;
  FastqReader& operator=(const FastqReader&) = delete;

  FastqIterator begin();

  FastqIterator end();

private:
  std::shared_ptr<std::istream> m_input_stream; 

  void init_reader(const std::string& filename);
};

}  // end of namespace

#endif // gamgee__fastq_reader__guard