base_quals.h

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#ifndef gamgee__base_quals__guard
#define gamgee__base_quals__guard

#include "htslib/sam.h"

#include <memory>

namespace gamgee {

class BaseQuals {
 public:
  explicit BaseQuals(const std::shared_ptr<bam1_t>& sam_record);
  BaseQuals(const BaseQuals& other);
  BaseQuals(BaseQuals&& other) = default;
  BaseQuals& operator=(const BaseQuals& other);
  BaseQuals& operator=(BaseQuals&& other) = default;
  ~BaseQuals() = default; 

  uint8_t operator[](const uint32_t index) const; 
  uint8_t& operator[](const uint32_t index);      
  uint32_t size() const { return m_num_quals; }   
  bool operator==(const BaseQuals& other) const;  
  bool operator!=(const BaseQuals& other) const;  
  std::string to_string() const;                  

 private:
  std::shared_ptr<bam1_t> m_sam_record; 
  uint8_t* m_quals;                     
  uint32_t m_num_quals;                 

  friend class SamBuilder; 
};

}

#endif /* gamgee__base_quals__guard */