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What is Gamgee

A C++ interface for key next generation sequencing file formats. This library provides an API for handilng FASTA, FASTQ, SAM, BAM, CRAM, VCF, BCF, BED, GATK/Picard intervals and interval_list files.

The APIs are free to change until we reach version 1.x

Developer docs View on Github Download ZIP Download TAR

Developer Blog

Using Gamgee

Instructions on how to set up your development environment, building, running and testing are here


Gamgee is copyrighted under the MIT License.